| # | Rider | Team | Time | Gap |
|---|---|---|---|---|
| 1 | Andrey Zeits | Astana Qazaqstan Team | 09:13:30 | |
| 2 | Antonio Nibali | Astana Qazaqstan Team | + 25 | + 25 |
| 3 | William Eaves | ARA | Skip Capital | + 33 | + 33 |
| 4 | Benjami Prades | JCL Team UKYO | + 35 | + 35 |
| 5 | Benjamin Dyball | Victoire Hiroshima | + 39 | + 39 |
| 6 | Leonel Quintero | Victoire Hiroshima | + 54 | + 54 |
| 7 | Ryan Cavanagh | KINAN Racing Team | + 01:04 | + 01:04 |
| 8 | Masahiro Ishigami | Aisan Racing Team | + 02:19 | + 02:19 |
| 9 | Jambaljamts Sainbayar | Terengganu Polygon Cycling Team | + 02:28 | + 02:28 |
| 10 | James Oram | Bolton Equities Black Spoke | + 02:34 | + 02:34 |
| 11 | Junsei Tani | Utsunomiya Blitzen | + 02:34 | + 02:34 |
| 12 | Drew Morey | KINAN Racing Team | + 02:34 | + 02:34 |
| 13 | Yusuke Kadota | EF Education-NIPPO Development Team | + 03:39 | + 03:39 |
| 14 | Victor Vercouillie | Bolton Equities Black Spoke | + 03:42 | + 03:42 |
| 15 | Nathan Earle | JCL Team UKYO | + 04:01 | + 04:01 |
| 16 | Toki Sawada | Utsunomiya Blitzen | + 04:11 | + 04:11 |
| 17 | Vicente Toribio Jose | Matrix Powertag | + 05:12 | + 05:12 |
| 18 | Jo Hashikawa | EF Education-NIPPO Development Team | + 06:56 | + 06:56 |
| 19 | Atsushi Oka | JCL Team UKYO | + 08:45 | + 08:45 |
| 20 | Dan Gardner | Bolton Equities Black Spoke | + 11:51 | + 11:51 |
| 21 | Naoki Kojima | Team Bridgestone Cycling | + 14:25 | + 14:25 |
| 22 | Keigo Kusaba | Aisan Racing Team | + 14:44 | + 14:44 |
| 23 | Tadaaki Nakai | Shimano Racing | + 14:44 | + 14:44 |
| 24 | Declan Trezise | ARA | Skip Capital | + 15:11 | + 15:11 |
| 25 | Connor Reardon | St George Continental Cycling Team | + 15:25 | + 15:25 |
| 26 | Kazuto Minami | VC Fukuoka | + 15:33 | + 15:33 |
| 27 | Kane Richards | ARA | Skip Capital | + 15:39 | + 15:39 |
| 28 | Genki Yamamoto | KINAN Racing Team | + 15:46 | + 15:46 |
| 29 | Lachlan Miller | ARA | Skip Capital | + 16:20 | + 16:20 |
| 30 | Yudai Arashiro | KINAN Racing Team | + 16:32 | + 16:32 |
| 31 | Yoshiki Terada | Shimano Racing | + 17:22 | + 17:22 |
| 32 | Hayato Okamoto | Aisan Racing Team | + 17:33 | + 17:33 |
| 33 | Ollie Jones | Bolton Equities Black Spoke | + 17:56 | + 17:56 |
| 34 | Tegshbayar Batsaikhan | Roojai Online Insurance | + 21:02 | + 21:02 |
| 35 | Georgios Boúglas | Matrix Powertag | + 21:10 | + 21:10 |
| 36 | Ronnilan Quita | Go for Gold Philippines | + 22:03 | + 22:03 |
| 37 | Takumi Yamada | EF Education-NIPPO Development Team | + 22:15 | + 22:15 |
| 38 | Kosuke Takeyama | JCL Team UKYO | + 23:00 | + 23:00 |
| 39 | Aiman Mohd Zariff Nur | Terengganu Polygon Cycling Team | + 23:21 | + 23:21 |
| 40 | Yusuke Kubota | Victoire Hiroshima | + 23:31 | + 23:31 |
| 41 | Carter Bettles | Victoire Hiroshima | + 24:28 | + 24:28 |
| 42 | Hijiri Oda | EF Education-NIPPO Development Team | + 25:21 | + 25:21 |
| 43 | Koki Kamada | VC Fukuoka | + 26:38 | + 26:38 |
| 44 | Kazushige Kuboki | Team Bridgestone Cycling | + 26:40 | + 26:40 |
| 45 | Keisuke Aso | Victoire Hiroshima | + 27:28 | + 27:28 |
| 46 | Rei Onodera | Utsunomiya Blitzen | + 29:32 | + 29:32 |
| 47 | Igor Chzhan | Astana Qazaqstan Team | + 29:57 | + 29:57 |
| 48 | Nicolas Vinokurov | Astana Qazaqstan Team | + 29:57 | + 29:57 |
| 49 | Shotaro Watanabe | Aisan Racing Team | + 30:24 | + 30:24 |
| 50 | Mitchel Fitzsimons | Bolton Equities Black Spoke | + 30:47 | + 30:47 |
| 51 | Nariyuki Masuda | JCL Team UKYO | + 31:34 | + 31:34 |
| 52 | Josh Kench | Bolton Equities Black Spoke | + 31:50 | + 31:50 |
| 53 | Daiki Yasuhara | Matrix Powertag | + 31:52 | + 31:52 |
| 54 | Keigo Yoshida | Shimano Racing | + 32:50 | + 32:50 |
| 55 | Yevgeniy Gidich | Astana Qazaqstan Team | + 32:52 | + 32:52 |
| 56 | Edgar Nohales Nieto | Matrix Powertag | + 33:34 | + 33:34 |
| 57 | Kohei Yokotsuka | VC Fukuoka | + 33:50 | + 33:50 |
| 58 | Tetsuo Yamamoto | Team Bridgestone Cycling | + 33:53 | + 33:53 |
| 59 | Takayuki Abe | Utsunomiya Blitzen | + 35:37 | + 35:37 |
| 60 | Jay Lucero Jericho | Go for Gold Philippines | + 36:28 | + 36:28 |
| 61 | Lachlan Harrigan | St George Continental Cycling Team | + 37:06 | + 37:06 |
| 62 | Kota Sumiyoshi | Sparkle Oita Racing Team | + 39:04 | + 39:04 |
| 63 | Alexandre Vinokurov | Astana Qazaqstan Team | + 39:16 | + 39:16 |
| 64 | Saya Kuroeda | Sparkle Oita Racing Team | + 39:55 | + 39:55 |
| 65 | Cameron Ivory | St George Continental Cycling Team | + 41:34 | + 41:34 |
| 66 | Masato Nakashima | VC Fukuoka | + 42:49 | + 42:49 |
| 67 | Naoki Mukaigawa | VC Fukuoka | + 43:39 | + 43:39 |
| 68 | Takaaki Hori | Utsunomiya Blitzen | + 43:47 | + 43:47 |
| 69 | Hayato Tobaru | Aisan Racing Team | + 45:08 | + 45:08 |
| 70 | Kohiro Hatsukawa | Aisan Racing Team | + 45:30 | + 45:30 |
| 71 | James Mendoza Aidan | Go for Gold Philippines | + 46:50 | + 46:50 |
| 72 | Masayuki Shibata | Victoire Hiroshima | + 47:03 | + 47:03 |
| 73 | Keitaro Sawada | Sparkle Oita Racing Team | + 49:56 | + 49:56 |
| 74 | Haruhi Honda | Utsunomiya Blitzen | + 58:15 | + 58:15 |