| # | Rider | Team | Time | Gap |
|---|---|---|---|---|
| 1 | Euskaltel-euskadi | 03:51:07 | 03:51:07 | |
| 2 | Team Katusha | + 00 | + 00 | |
| 3 | Team Movistar | + 04 | + 04 | + 04 |
| 4 | Geox-tmc | + 04 | + 04 | + 04 |
| 5 | Team Movistar | + 04 | + 04 | + 04 |
| 6 | Team Movistar | + 08 | + 08 | + 08 |
| 7 | Geox-tmc | + 08 | + 08 | + 08 |
| 8 | Geox-tmc | + 08 | + 08 | + 08 |
| 9 | Sojasun Saur - | + 10 | + 10 | + 10 |
| 10 | Continental Orbea | + 12 | + 12 | + 12 |
| 11 | Euskaltel-euskadi | + 12 | + 12 | + 12 |
| 12 | Euskaltel-euskadi | + 14 | + 14 | + 14 |
| 13 | Colombia Colombia Es Pasion-cafe de | + 14 | + 14 | + 14 |
| 14 | Geox-tmc | + 19 | + 19 | + 19 |
| 15 | Sojasun Saur - | + 20 | + 20 | + 20 |
| 16 | Mercator Topsport Vlaanderen - | + 20 | + 20 | + 20 |
| 17 | Team Movistar | + 20 | + 20 | + 20 |
| 18 | Granada Andalucia Caja | + 23 | + 23 | + 23 |
| 19 | Geox-tmc | + 23 | + 23 | + 23 |
| 20 | Fdj | + 25 | + 25 | + 25 |
| 21 | - Cipi Androni Giocattoli | + 26 | + 26 | + 26 |
| 22 | Sojasun Saur - | + 26 | + 26 | + 26 |
| 23 | Colombia Colombia Es Pasion-cafe de | + 26 | + 26 | + 26 |
| 24 | Team Katusha | + 29 | + 29 | + 29 |
| 25 | Geox-tmc | + 33 | + 33 | + 33 |
| 26 | Geox-tmc | + 33 | + 33 | + 33 |
| 27 | Mercator Topsport Vlaanderen - | + 33 | + 33 | + 33 |
| 28 | Granada Andalucia Caja | + 33 | + 33 | + 33 |
| 29 | Team Movistar | + 36 | + 36 | + 36 |
| 30 | Team Movistar | + 38 | + 38 | + 38 |
| 31 | Sapone Acqua E | + 38 | + 38 | + 38 |
| 32 | Shimano Skil - | + 38 | + 38 | + 38 |
| 33 | Colombia Colombia Es Pasion-cafe de | + 38 | + 38 | + 38 |
| 34 | Etupes C.c. | + 38 | + 38 | + 38 |
| 35 | Team Katusha | + 38 | + 38 | + 38 |
| 36 | Team Katusha | + 38 | + 38 | + 38 |
| 37 | Team Katusha | + 38 | + 38 | + 38 |
| 38 | Sapone Acqua E | + 38 | + 38 | + 38 |
| 39 | Granada Andalucia Caja | + 46 | + 46 | + 46 |
| 40 | Rural Caja | + 46 | + 46 | + 46 |
| 41 | Team Katusha | + 48 | + 48 | + 48 |
| 42 | - Cipi Androni Giocattoli | + 50 | + 50 | + 50 |
| 43 | Sapone Acqua E | + 50 | + 50 | + 50 |
| 44 | Team Movistar | + 50 | + 50 | + 50 |
| 45 | Rural Caja | + 52 | + 52 | + 52 |
| 46 | Leon Burgos 2016 - Castilla Y | + 52 | + 52 | + 52 |
| 47 | Mercator Topsport Vlaanderen - | + 52 | + 52 | + 52 |
| 48 | Colombia Colombia Es Pasion-cafe de | + 54 | + 54 | + 54 |
| 49 | Mercator Topsport Vlaanderen - | + 54 | + 54 | + 54 |
| 50 | Mercator Topsport Vlaanderen - | + 54 | + 54 | + 54 |
| 51 | Mercator Topsport Vlaanderen - | + 54 | + 54 | + 54 |
| 52 | Shimano Skil - | + 54 | + 54 | + 54 |
| 53 | Sojasun Saur - | + 54 | + 54 | + 54 |
| 54 | Shimano Skil - | + 54 | + 54 | + 54 |
| 55 | Leon Burgos 2016 - Castilla Y | + 54 | + 54 | + 54 |
| 56 | Rural Caja | + 54 | + 54 | + 54 |
| 57 | Continental Orbea | + 54 | + 54 | + 54 |
| 58 | Continental Orbea | + 59 | + 59 | + 59 |
| 59 | Continental Orbea | + 59 | + 59 | + 59 |
| 60 | Granada Andalucia Caja | + 59 | + 59 | + 59 |
| 61 | Colombia Colombia Es Pasion-cafe de | + 59 | + 59 | + 59 |
| 62 | - Cipi Androni Giocattoli | + 01:03 | + 01:03 | + 01:03 |
| 63 | Leon Burgos 2016 - Castilla Y | + 01:07 | + 01:07 | + 01:07 |
| 64 | Fdj | + 01:12 | + 01:12 | + 01:12 |
| 65 | Leon Burgos 2016 - Castilla Y | + 01:14 | + 01:14 | + 01:14 |
| 66 | Euskaltel-euskadi | + 01:18 | + 01:18 | + 01:18 |
| 67 | Team Katusha | + 01:22 | + 01:22 | + 01:22 |
| 68 | Granada Andalucia Caja | + 01:22 | + 01:22 | + 01:22 |
| 69 | - Cipi Androni Giocattoli | + 01:22 | + 01:22 | + 01:22 |
| 70 | Geox-tmc | + 01:24 | + 01:24 | + 01:24 |
| 71 | Sojasun Saur - | + 01:24 | + 01:24 | + 01:24 |
| 72 | Continental Orbea | + 01:24 | + 01:24 | + 01:24 |
| 73 | Sapone Acqua E | + 01:24 | + 01:24 | + 01:24 |
| 74 | Colombia Colombia Es Pasion-cafe de | + 01:24 | + 01:24 | + 01:24 |
| 75 | Sapone Acqua E | + 01:24 | + 01:24 | + 01:24 |
| 76 | Colombia Colombia Es Pasion-cafe de | + 01:24 | + 01:24 | + 01:24 |
| 77 | - Acnc Sojasun Espoir | + 01:24 | + 01:24 | + 01:24 |
| 78 | Colombia Colombia Es Pasion-cafe de | + 01:24 | + 01:24 | + 01:24 |
| 79 | Euskaltel-euskadi | + 01:31 | + 01:31 | + 01:31 |
| 80 | Granada Andalucia Caja | + 01:33 | + 01:33 | + 01:33 |
| 81 | - Cipi Androni Giocattoli | + 01:51 | + 01:51 | + 01:51 |
| 82 | Leon Burgos 2016 - Castilla Y | + 01:53 | + 01:53 | + 01:53 |
| 83 | Granada Andalucia Caja | + 02:05 | + 02:05 | + 02:05 |
| 84 | Rural Caja | + 02:10 | + 02:10 | + 02:10 |
| 85 | Rural Caja | + 02:21 | + 02:21 | + 02:21 |
| 86 | Shimano Skil - | + 02:29 | + 02:29 | + 02:29 |
| 87 | Sojasun Saur - | + 02:29 | + 02:29 | + 02:29 |
| 88 | Euskaltel-euskadi | + 02:29 | + 02:29 | + 02:29 |
| 89 | Fdj | + 02:29 | + 02:29 | + 02:29 |
| 90 | - Cipi Androni Giocattoli | + 02:29 | + 02:29 | + 02:29 |
| 91 | Rural Caja | + 02:29 | + 02:29 | + 02:29 |
| 92 | Shimano Skil - | + 02:29 | + 02:29 | + 02:29 |
| 93 | Fdj | + 02:29 | + 02:29 | + 02:29 |
| 94 | Euskaltel-euskadi | + 02:29 | + 02:29 | + 02:29 |
| 95 | Continental Orbea | + 02:29 | + 02:29 | + 02:29 |
| 96 | Continental Orbea | + 02:29 | + 02:29 | + 02:29 |
| 97 | Sapone Acqua E | + 02:29 | + 02:29 | + 02:29 |
| 98 | Rural Caja | + 02:40 | + 02:40 | + 02:40 |
| 99 | Team Katusha | + 03:09 | + 03:09 | + 03:09 |
| 100 | Sapone Acqua E | + 03:10 | + 03:10 | + 03:10 |
| 101 | Team Movistar | + 03:18 | + 03:18 | + 03:18 |
| 102 | Leon Burgos 2016 - Castilla Y | + 03:18 | + 03:18 | + 03:18 |
| 103 | Leon Burgos 2016 - Castilla Y | + 03:18 | + 03:18 | + 03:18 |
| 104 | Continental Orbea | + 03:20 | + 03:20 | + 03:20 |
| 105 | Granada Andalucia Caja | + 03:21 | + 03:21 | + 03:21 |
| 106 | Shimano Skil - | + 03:21 | + 03:21 | + 03:21 |
| 107 | Sojasun Saur - | + 03:24 | + 03:24 | + 03:24 |
| 108 | Shimano Skil - | + 03:40 | + 03:40 | + 03:40 |
| 109 | Rural Caja | + 03:41 | + 03:41 | + 03:41 |
| 110 | Fdj | + 04:09 | + 04:09 | + 04:09 |
| 111 | Shimano Skil - | + 04:11 | + 04:11 | + 04:11 |
| 112 | Fdj | + 04:13 | + 04:13 | + 04:13 |
| 113 | Mercator Topsport Vlaanderen - | + 04:13 | + 04:13 | + 04:13 |
| 114 | Mercator Topsport Vlaanderen - | + 04:13 | + 04:13 | + 04:13 |
| 115 | Continental Orbea | + 04:16 | + 04:16 | + 04:16 |
| 116 | - Cipi Androni Giocattoli | + 04:20 | + 04:20 | + 04:20 |
| 117 | Sapone Acqua E | + 04:43 | + 04:43 | + 04:43 |
| 118 | - Cipi Androni Giocattoli | + 04:43 | + 04:43 | + 04:43 |
| 119 | Leon Burgos 2016 - Castilla Y | + 13:18 | + 13:18 | + 13:18 |