| # | Rider | Team | Time | Gap |
|---|---|---|---|---|
| 1 | René Weissinger | Volksbank - Leingruber - Ideal | 03:56:48 | |
| 2 | Giampaolo Cheula | Team Barloworld - Valsir | + 00 | |
| 3 | Alexandre Moos | Phonak Hearing Systems | + 00 | |
| 4 | Matija Kvasina | Perutnina Ptuj | + 00 | |
| 5 | Stefan Rucker | Elk Haus - Simplon | + 00 | |
| 6 | Gilbert Obrist | Saeco - Romer's - Wetzikon | + 03:16 | + 03:16 |
| 7 | Martin Elmiger | Phonak Hearing Systems | + 03:16 | + 03:16 |
| 8 | Martin Hvastija | Perutnina Ptuj | + 03:16 | + 03:16 |
| 9 | Mitja Mahoric | Perutnina Ptuj | + 03:16 | + 03:16 |
| 10 | Andrej Omulec | Radenska - Rog | + 03:16 | + 03:16 |
| 11 | Gregory Rast | Phonak Hearing Systems | + 03:20 | + 03:20 |
| 12 | Martin Hebik | AC Sparta Praha | + 03:20 | + 03:20 |
| 13 | Adam Hansen | Elk Haus - Simplon | + 03:20 | + 03:20 |
| 14 | Crescenzo D'amore | Acqua e Sapone - Adria Mobil | + 03:20 | + 03:20 |
| 15 | Stefan Felder | Saeco - Romer's - Wetzikon | + 03:39 | + 03:39 |
| 16 | Massimo Demarin | Perutnina Ptuj | + 03:43 | + 03:43 |
| 17 | Jure Kocjan | Radenska - Rog | + 03:59 | + 03:59 |
| 18 | Wojciech Dybel | Team Nippo | + 03:59 | + 03:59 |
| 19 | Harald Morscher | Volksbank - Leingruber - Ideal | + 03:59 | + 03:59 |
| 20 | Jan Pokrandt | RSH | + 03:59 | + 03:59 |
| 21 | Sven de Weerdt | Team Cyclingnews.com | + 03:59 | + 03:59 |
| 22 | Jeremy Maartens | Team Barloworld - Valsir | + 03:59 | + 03:59 |
| 23 | Glen Chadwick | Team Cyclingnews.com | + 03:59 | + 03:59 |
| 24 | Matic Strgar | Radenska - Rog | + 03:59 | + 03:59 |
| 25 | Vladimir Efimkin | Team Barloworld - Valsir | + 04:04 | + 04:04 |
| 26 | Bert Grabsch | Phonak Hearing Systems | + 04:04 | + 04:04 |
| 27 | Libor Hlavac | AC Sparta Praha | + 04:04 | + 04:04 |
| 28 | Patrick Keller | AC Sparta Praha | + 04:04 | + 04:04 |
| 29 | David Tratnik | Radenska - Rog | + 04:31 | + 04:31 |
| 30 | Denis Bertolini | Acqua e Sapone - Adria Mobil | + 05:04 | + 05:04 |
| 31 | Alex Coutts | Flanders | + 05:04 | + 05:04 |
| 32 | Christoph Girschweiler | Saeco - Romer's - Wetzikon | + 05:04 | + 05:04 |
| 33 | Daniel Schnider | Phonak Hearing Systems | + 05:04 | + 05:04 |
| 34 | Daniel Strauch | RSH | + 05:04 | + 05:04 |
| 35 | Thomas Oredsson | Volksbank - Leingruber - Ideal | + 05:04 | + 05:04 |
| 36 | Leon Makarovic | Radenska - Rog | + 05:04 | + 05:04 |
| 37 | Benjamin Baumgartner | Saeco - Romer's - Wetzikon | + 05:04 | + 05:04 |
| 38 | Wolfgang Murer | Elk Haus - Simplon | + 05:04 | + 05:04 |
| 39 | David Harrigan | Flanders | + 05:04 | + 05:04 |
| 40 | Martin Comploi | Elk Haus - Simplon | + 05:04 | + 05:04 |
| 41 | Petr Pucelik | AC Sparta Praha | + 05:04 | + 05:04 |
| 42 | Daniele Silvestri Davide | Team Nippo | + 05:04 | + 05:04 |
| 43 | Matej Gnezda | Radenska - Rog | + 05:04 | + 05:04 |
| 44 | Tomislav Danculovic | Perutnina Ptuj | + 05:04 | + 05:04 |
| 45 | Takeshi Hashimoto | Team Nippo | + 05:04 | + 05:04 |
| 46 | Viktor Rapinski | Phonak Hearing Systems | + 05:04 | + 05:04 |
| 47 | Cameron Jennings | Team Cyclingnews.com | + 05:04 | + 05:04 |
| 48 | Fraser Mcmaster | Volksbank - Leingruber - Ideal | + 05:04 | + 05:04 |
| 49 | Dennis Haueisen | RSH | + 05:04 | + 05:04 |
| 50 | Hamish Haynes | Team Cyclingnews.com | + 05:15 | + 05:15 |
| 51 | Luca Celli | Team Barloworld - Valsir | + 05:15 | + 05:15 |
| 52 | Pascal Hungerbühler | Volksbank - Leingruber - Ideal | + 05:15 | + 05:15 |
| 53 | Yasuhiro Yamamoto | Team Nippo | + 05:15 | + 05:15 |
| 54 | Jimmy Tapparel | Saeco - Romer's - Wetzikon | + 05:15 | + 05:15 |