| # | Rider | Team | Time | Gap |
|---|---|---|---|---|
| 1 | Murilo Fischer | Garmin-Cervélo | 04:09:49 | |
| 2 | Óscar Freire | Rabobank | + 00 | |
| 3 | Joaquin Rojas José | Movistar Team | + 00 | |
| 4 | Francisco Ventoso | Movistar Team | + 00 | |
| 5 | Giacomo Nizzolo | Leopard-Trek | + 00 | |
| 6 | Tony Gallopin | Cofidis | + 00 | |
| 7 | Dario Cataldo | Quick Step | + 00 | |
| 8 | Klaas Lodewyck | Omega Pharma-Lotto | + 00 | |
| 9 | Tom Leezer | Rabobank | + 00 | |
| 10 | John Degenkolb | Team HTC - Highroad | + 00 | |
| 11 | Johannes Fröhlinger | Skil - Shimano | + 00 | |
| 12 | Sylvain Chavanel | Quick Step | + 00 | |
| 13 | Niki Terpstra | Quick Step | + 00 | |
| 14 | Vicente Reynès | Omega Pharma-Lotto | + 00 | |
| 15 | Rubén Pérez Moreno | Euskaltel-Euskadi | + 00 | |
| 16 | Alexandr Kolobnev | Katusha Team | + 00 | |
| 17 | Fabian Wegmann | Leopard-Trek | + 00 | |
| 18 | Philippe Gilbert | Omega Pharma-Lotto | + 00 | |
| 19 | Ryder Hesjedal | Garmin-Cervélo | + 00 | |
| 20 | Gorka Izagirre | Euskaltel-Euskadi | + 00 | |
| 21 | Pello Bilbao | Orbea Continental | + 05 | + 05 |
| 22 | Amets Txurruka | Euskaltel-Euskadi | + 05 | + 05 |
| 23 | Martin Velits | Team HTC - Highroad | + 05 | + 05 |
| 24 | Eduard Vorganov | Katusha Team | + 05 | + 05 |
| 25 | Ivan Velasco | Euskaltel-Euskadi | + 05 | + 05 |
| 26 | David Bernabeu | Andalucia Caja Granada | + 07 | + 07 |
| 27 | Bert Grabsch | Team HTC - Highroad | + 07 | + 07 |
| 28 | Jérôme Pineau | Quick Step | + 07 | + 07 |
| 29 | Bart de Clercq | Omega Pharma-Lotto | + 07 | + 07 |
| 30 | León Sánchez Luis | Rabobank | + 07 | + 07 |
| 31 | Vicente Toribio Jose | Andalucia Caja Granada | + 07 | + 07 |
| 32 | José Cobo Juan | Geox-TMC | + 07 | + 07 |
| 33 | Luis Pasamontes | Movistar Team | + 07 | + 07 |
| 34 | Ion Izagirre | Euskaltel-Euskadi | + 07 | + 07 |
| 35 | Mikel Landa | Euskaltel-Euskadi | + 07 | + 07 |
| 36 | Arkaitz Durán | Geox-TMC | + 07 | + 07 |
| 37 | Matthias Brändle | Geox-TMC | + 07 | + 07 |
| 38 | Javier Ramirez | Andalucia Caja Granada | + 07 | + 07 |
| 39 | Addy Engels | Quick Step | + 07 | + 07 |
| 40 | Miguel Minguez | Euskaltel-Euskadi | + 07 | + 07 |
| 41 | Adrian Palomares | Andalucia Caja Granada | + 07 | + 07 |
| 42 | Haimar Zubeldia | RadioShack | + 07 | + 07 |
| 43 | Jose Herrada | Caja Rural | + 07 | + 07 |
| 44 | Markel Irizar | RadioShack | + 07 | + 07 |
| 45 | Philip Deignan | RadioShack | + 07 | + 07 |
| 46 | Jonathan Castroviejo | Euskaltel-Euskadi | + 07 | + 07 |
| 47 | Sergio Mantecon | + 20 | + 20 | |
| 48 | Sebastian Langeveld | Rabobank | + 24 | + 24 |
| 49 | Peter Velits | Team HTC - Highroad | + 30 | + 30 |
| 50 | David Blanco | Geox-TMC | + 31 | + 31 |
| 51 | Denis Menchov | Geox-TMC | + 32 | + 32 |
| 52 | Fabio Duarte | Geox-TMC | + 32 | + 32 |
| 53 | Linus Gerdemann | Leopard-Trek | + 41 | + 41 |
| 54 | Xavier Tondó | Movistar Team | + 48 | + 48 |
| 55 | Benat Intxausti | Movistar Team | + 57 | + 57 |
| 56 | Samuel Horstmann | Price Your Bike | + 01:02 | + 01:02 |
| 57 | Aleksejs Saramotins | Cofidis | + 01:14 | + 01:14 |
| 58 | Pablo Urtasun | Euskaltel-Euskadi | + 01:15 | + 01:15 |
| 59 | Christopher Jennings | Burgos 2016 - Castilla y Leon | + 03:13 | + 03:13 |
| 60 | Carlos Verona | Burgos 2016 - Castilla y Leon | + 03:13 | + 03:13 |
| 61 | Oscar Grau Jorda | Burgos 2016 - Castilla y Leon | + 03:13 | + 03:13 |
| 62 | Victor de La Parte | Caja Rural | + 03:13 | + 03:13 |
| 63 | Garikoitz Bravo | Caja Rural | + 03:13 | + 03:13 |
| 64 | Grischa Niermann | Rabobank | + 03:13 | + 03:13 |
| 65 | Daniel Schorn | Team NetApp | + 03:13 | + 03:13 |
| 66 | Steven Cozza | Team NetApp | + 03:13 | + 03:13 |
| 67 | Iñaki Isasi | Euskaltel-Euskadi | + 03:13 | + 03:13 |
| 68 | Martijn Maaskant | Garmin-Cervélo | + 03:13 | + 03:13 |
| 69 | Tyler Farrar | Garmin-Cervélo | + 03:13 | + 03:13 |
| 70 | Aritz Etxebarria Etxebarria | Orbea Continental | + 03:13 | + 03:13 |
| 71 | Danny Pate | Team HTC - Highroad | + 03:13 | + 03:13 |
| 72 | Mikel Bizkarra | Orbea Continental | + 03:13 | + 03:13 |
| 73 | Frederik Willems | Omega Pharma-Lotto | + 03:16 | + 03:16 |
| 74 | Gert Dockx | Omega Pharma-Lotto | + 03:16 | + 03:16 |
| 75 | Anders Lund | Leopard-Trek | + 03:16 | + 03:16 |
| 76 | Jon Aberasturi | Orbea Continental | + 03:22 | + 03:22 |
| 77 | Pablo Lechuga | Andalucia Caja Granada | + 03:22 | + 03:22 |
| 78 | David Belda | Burgos 2016 - Castilla y Leon | + 03:22 | + 03:22 |
| 79 | Elias Schmaeh | Price Your Bike | + 03:22 | + 03:22 |
| 80 | Patrick Schelling | Price Your Bike | + 03:22 | + 03:22 |
| 81 | Raul Alarcon | Barbot - Efapel | + 03:22 | + 03:22 |
| 82 | Aitor Galdos | Caja Rural | + 04:09 | + 04:09 |
| 83 | Oleg Chuzhda | Caja Rural | + 04:09 | + 04:09 |
| 84 | Guillaume van Keirsbulck | Quick Step | + 06:27 | + 06:27 |
| 85 | Julien Vermote | Quick Step | + 06:27 | + 06:27 |
| 86 | Vladimir Karpets | Katusha Team | + 06:27 | + 06:27 |
| 87 | Caleb Fairly | Team HTC - Highroad | + 06:27 | + 06:27 |
| 88 | Kevyn Ista | Cofidis | + 06:27 | + 06:27 |
| 89 | Brice Feillu | Leopard-Trek | + 06:27 | + 06:27 |
| 90 | Robert Wagner | Leopard-Trek | + 06:27 | + 06:27 |
| 91 | Jesus Herrada | Movistar Team | + 08:09 | + 08:09 |
| 92 | Silva Pires Bruno | Leopard-Trek | + 08:09 | + 08:09 |
| 93 | Kevin Seeldraeyers | Quick Step | + 08:09 | + 08:09 |
| 94 | Jens Voigt | Leopard-Trek | + 08:09 | + 08:09 |
| 95 | Danilo Di Luca | Katusha Team | + 11:31 | + 11:31 |
| 96 | Pablo Lastras | Movistar Team | + 11:31 | + 11:31 |
| 97 | Joan Horrach | Katusha Team | + 11:31 | + 11:31 |
| 98 | André Greipel | Omega Pharma-Lotto | + 11:31 | + 11:31 |
| 99 | Diego Gallego | Burgos 2016 - Castilla y Leon | + 14:59 | + 14:59 |
| 100 | Antonio Miguel Parra | + 14:59 | + 14:59 | |
| 101 | Lluis Mas | Burgos 2016 - Castilla y Leon | + 14:59 | + 14:59 |
| 102 | Petr Ignatenko | Katusha Team | + 14:59 | + 14:59 |
| 103 | Diego Milan | Caja Rural | + 14:59 | + 14:59 |
| 104 | Manuel Anton Francisco | Burgos 2016 - Castilla y Leon | + 14:59 | + 14:59 |
| 105 | Jens Keukeleire | Cofidis | + 15:01 | + 15:01 |
| 106 | Nico Sijmens | Cofidis | + 15:01 | + 15:01 |