| # | Rider | Team | Time | Gap |
|---|---|---|---|---|
| 1 | Manuele Mori | Saunier Duval - Prodir | 04:09:58 | |
| 2 | Fabian Wegmann | Gerolsteiner | + 06 | + 06 |
| 3 | Francesco Gavazzi | Lampre-Fondital | + 06 | + 06 |
| 4 | Jesus Del Nero Montes | Saunier Duval - Prodir | + 06 | + 06 |
| 5 | Yukiya Arashiro | Nippo Corporation | + 07 | + 07 |
| 6 | Rubens Bertogliati | Saunier Duval - Prodir | + 07 | + 07 |
| 7 | Taiji Nishitani | Aisan Racing Team | + 07 | + 07 |
| 8 | Marco Marzano | Lampre-Fondital | + 15 | + 15 |
| 9 | Yukihiro Doi | Skil - Shimano | + 25 | + 25 |
| 10 | Takashi Miyazawa | Nippo Corporation | + 01:00 | + 01:00 |
| 11 | Hidenori Nodera | Skil - Shimano | + 01:00 | + 01:00 |
| 12 | Darren Lapthorne | Drapac - Porsche Development | + 01:00 | + 01:00 |
| 13 | Takumi Beppu | Aisan Racing Team | + 01:00 | + 01:00 |
| 14 | Makoto Iijima | + 01:00 | + 01:00 | |
| 15 | Yip Tang Wang | Hong Kong Pro Cycling | + 01:00 | + 01:00 |
| 16 | Peter Wrolich | Gerolsteiner | + 01:00 | + 01:00 |
| 17 | Ronny Scholz | Gerolsteiner | + 01:00 | + 01:00 |
| 18 | Tomoya Kano | Skil - Shimano | + 01:02 | + 01:02 |
| 19 | Nariyuki Masuda | Team Miyata | + 01:02 | + 01:02 |
| 20 | Takahiro Yamashita | Team Miyata | + 01:05 | + 01:05 |
| 21 | Kazuya Okazaki | Nippo Corporation | + 01:06 | + 01:06 |
| 22 | Yoshiyuki Abe | Skil - Shimano | + 01:06 | + 01:06 |
| 23 | Satoshi Hirose | Aisan Racing Team | + 02:46 | + 02:46 |
| 24 | Stuart Shaw | Drapac - Porsche Development | + 03:35 | + 03:35 |
| 25 | Mark O'brien | Drapac - Porsche Development | + 04:25 | + 04:25 |
| 26 | Abbas Saeidi Tanha | Izlamic Azad Univercity | + 04:25 | + 04:25 |
| 27 | Daniel Braunsteins | Drapac - Porsche Development | + 04:25 | + 04:25 |
| 28 | Raivis Belohvosciks | Saunier Duval - Prodir | + 04:28 | + 04:28 |
| 29 | Makoto Nakamura | Team Miyata | + 04:31 | + 04:31 |
| 30 | Takeaki Ayabe | Aisan Racing Team | + 04:31 | + 04:31 |
| 31 | Akira Kakinuma | Team Miyata | + 04:35 | + 04:35 |
| 32 | Riccardo Riccò | Saunier Duval - Prodir | + 04:37 | + 04:37 |
| 33 | San Wu Kin | Hong Kong Pro Cycling | + 06:17 | + 06:17 |
| 34 | Robert Williams | Drapac - Porsche Development | + 06:17 | + 06:17 |
| 35 | Hsin Chu Fan | + 06:17 | + 06:17 | |
| 36 | Tsun Lam Kai | Hong Kong Pro Cycling | + 06:17 | + 06:17 |
| 37 | Prajak Mahawong | Nippo Corporation | + 06:17 | + 06:17 |
| 38 | Jianhua Ji | + 06:17 | + 06:17 | |
| 39 | Haijun Ma | + 06:17 | + 06:17 | |
| 40 | Okart Bua-loi | + 06:17 | + 06:17 | |
| 41 | Hing Chan Chun | Hong Kong Pro Cycling | + 06:17 | + 06:17 |
| 42 | Rongxi Zuo | + 06:17 | + 06:17 | |
| 43 | Hsiang Peng Kuei | Giant Asia Racing Team | + 06:17 | + 06:17 |
| 44 | Paolo Fornaciari | Lampre-Fondital | + 06:17 | + 06:17 |
| 45 | Phuchong Sai-udomsin | + 06:17 | + 06:17 | |
| 46 | Massimiliano Mori | Lampre-Fondital | + 06:17 | + 06:17 |
| 47 | Maurizio Girardini | Lampre-Fondital | + 06:17 | + 06:17 |
| 48 | Ken Hashikawa | Matrix Powertag | + 06:17 | + 06:17 |
| 49 | Heinrich Haussler | Gerolsteiner | + 06:17 | + 06:17 |
| 50 | Bernhard Kohl | Gerolsteiner | + 06:17 | + 06:17 |
| 51 | Yoshimasa Hirose | Skil - Shimano | + 06:17 | + 06:17 |
| 52 | Kazuhiro Mori | Aisan Racing Team | + 06:17 | + 06:17 |
| 53 | Masahiko Mifune | Matrix Powertag | + 06:17 | + 06:17 |
| 54 | Shinri Suzuki | Team Miyata | + 06:17 | + 06:17 |
| 55 | Yusuke Hatanaka | + 07:17 | + 07:17 | |
| 56 | Koji Fukushima | Nippo Corporation | + 11:02 | + 11:02 |
| 57 | Miyataka Shimizu | Nippo Corporation | + 11:02 | + 11:02 |
| 58 | Kohei Uchima | + 11:02 | + 11:02 |