| # | Rider | Team | Time | Gap |
|---|---|---|---|---|
| 1 | Bauke Mollema | Trek Factory Racing | 03:53:40 | |
| 2 | Diego Ulissi | Lampre-Merida | + 00 | |
| 3 | Yukiya Arashiro | Japan | + 00 | |
| 4 | Floris Gerts | BMC Racing Team | + 00 | |
| 5 | Jan Polanc | Lampre-Merida | + 11 | + 11 |
| 6 | Matej Mohoric | Cannondale - Garmin | + 16 | + 16 |
| 7 | Sebastian Henao | Team Sky | + 22 | + 22 |
| 8 | Benjami Prades | Matrix Powertag | + 44 | + 44 |
| 9 | Ben Swift | Team Sky | + 01:22 | + 01:22 |
| 10 | Yusuke Hatanaka | Team Ukyo | + 01:54 | + 01:54 |
| 11 | Michael Schär | BMC Racing Team | + 01:54 | + 01:54 |
| 12 | Manuele Mori | Lampre-Merida | + 01:54 | + 01:54 |
| 13 | Pierpaolo de Negri | Nippo - Vini Fantini | + 01:54 | + 01:54 |
| 14 | Sho Hatsuyama | Bridgestone - Anchor | + 01:54 | + 01:54 |
| 15 | Javier Mejias | Team Novo Nordisk | + 01:54 | + 01:54 |
| 16 | Vicente Toribio Jose | Matrix Powertag | + 01:54 | + 01:54 |
| 17 | Nariyuki Masuda | Utsynomiya Blitzen | + 01:54 | + 01:54 |
| 18 | Masakazu Ito | Aisan Racing Team | + 01:54 | + 01:54 |
| 19 | Ming Liu Shu | Attaque Team Gusto | + 01:54 | + 01:54 |
| 20 | Tomohiro Hayakawa | Aisan Racing Team | + 01:57 | + 01:57 |
| 21 | Manuel Senni | BMC Racing Team | + 01:59 | + 01:59 |
| 22 | Thomas Rabou | Attaque Team Gusto | + 01:59 | + 01:59 |
| 23 | Ryota Nishizono | Bridgestone - Anchor | + 02:03 | + 02:03 |
| 24 | Oscar Pujol | Team Ukyo | + 02:12 | + 02:12 |
| 25 | Charles Planet | Team Novo Nordisk | + 03:45 | + 03:45 |
| 26 | Genki Yamamoto | Nippo - Vini Fantini | + 06:58 | + 06:58 |
| 27 | Ruben Zepuntke | Cannondale - Garmin | + 07:06 | + 07:06 |
| 28 | Tao Geoghegan Hart | Team Sky | + 07:06 | + 07:06 |
| 29 | Peter Stetina | BMC Racing Team | + 07:06 | + 07:06 |
| 30 | Antonio Nibali | Nippo - Vini Fantini | + 07:06 | + 07:06 |
| 31 | Takeaki Amezawa | Nasu Blasen | + 07:10 | + 07:10 |
| 32 | Toshiki Omote | Japan | + 07:41 | + 07:41 |
| 33 | Hon Yeung Ying | Attaque Team Gusto | + 07:41 | + 07:41 |
| 34 | Peter Velits | BMC Racing Team | + 07:41 | + 07:41 |
| 35 | Martijn Verschoor | Team Novo Nordisk | + 07:41 | + 07:41 |
| 36 | Eiichi Hirai | Team Ukyo | + 07:43 | + 07:43 |
| 37 | Airan Fernandez | Matrix Powertag | + 07:43 | + 07:43 |
| 38 | Damien Monier | Bridgestone - Anchor | + 07:43 | + 07:43 |
| 39 | Laurent Didier | Trek Factory Racing | + 08:05 | + 08:05 |
| 40 | Eric Sheppard | Attaque Team Gusto | + 09:36 | + 09:36 |
| 41 | Takero Terasaki | Bridgestone - Anchor | + 10:51 | + 10:51 |
| 42 | Naoya Yoshioka | Nasu Blasen | + 10:51 | + 10:51 |