| # | Rider | Team | Time | Gap |
|---|---|---|---|---|
| 1 | Davide Villella | Cannondale - Drapac | 03:46:43 | |
| 2 | Christopher Juul-jensen | Orica - BikeExchange | + 06 | + 06 |
| 3 | Robert Power | Orica - BikeExchange | + 14 | + 14 |
| 4 | Manuele Mori | Lampre-Merida | + 14 | + 14 |
| 5 | Oscar Pujol | Team Ukyo | + 14 | + 14 |
| 6 | Alex Peters | Team Sky | + 14 | + 14 |
| 7 | Benjami Prades | Team Ukyo | + 17 | + 17 |
| 8 | Javier Mejias | Team Novo Nordisk | + 43 | + 43 |
| 9 | Yukiya Arashiro | Lampre-Merida | + 43 | + 43 |
| 10 | Joey Rosskopf | BMC Racing Team | + 43 | + 43 |
| 11 | Cameron Bayly | Attaque Team Gusto | + 45 | + 45 |
| 12 | Thomas Lebas | Bridgestone - Anchor | + 48 | + 48 |
| 13 | Taylor Phinney | BMC Racing Team | + 01:19 | + 01:19 |
| 14 | Mathew Hayman | Orica - BikeExchange | + 01:19 | + 01:19 |
| 15 | Pierpaolo de Negri | Nippo - Vini Fantini | + 01:19 | + 01:19 |
| 16 | Sho Hatsuyama | Bridgestone - Anchor | + 01:19 | + 01:19 |
| 17 | Jai Crawford | Kinan Cycling Team | + 01:19 | + 01:19 |
| 18 | Nariyuki Masuda | Utsunomiya Blitzen | + 01:19 | + 01:19 |
| 19 | Jasper Stuyven | Trek-Segafredo | + 01:19 | + 01:19 |
| 20 | Iuri Filosi | Nippo - Vini Fantini | + 01:19 | + 01:19 |
| 21 | Rodrigo Araque | Team Ukyo | + 01:19 | + 01:19 |
| 22 | Manuel Quinziato | BMC Racing Team | + 01:19 | + 01:19 |
| 23 | Kristoffer Skjerping | Cannondale - Drapac | + 01:19 | + 01:19 |
| 24 | Simone Petilli | Lampre-Merida | + 01:19 | + 01:19 |
| 25 | Ryota Nishizono | Bridgestone - Anchor | + 01:32 | + 01:32 |
| 26 | Mattia Cattaneo | Lampre-Merida | + 02:35 | + 02:35 |
| 27 | Takeaki Amezawa | Utsunomiya Blitzen | + 02:43 | + 02:43 |
| 28 | Yusuke Hatanaka | Team Ukyo | + 03:43 | + 03:43 |
| 29 | Hideto Nakane | + 03:43 | + 03:43 | |
| 30 | Yuzuru Suzuki | Utsunomiya Blitzen | + 03:47 | + 03:47 |
| 31 | Masahiro Ishigami | + 03:54 | + 03:54 | |
| 32 | Kevin de Mesmaeker | Team Novo Nordisk | + 04:25 | + 04:25 |
| 33 | Fumiyuki Beppu | Trek-Segafredo | + 04:25 | + 04:25 |
| 34 | Vicente Toribio Jose | Matrix Powertag | + 04:25 | + 04:25 |
| 35 | Nick Schultz | Orica - BikeExchange | + 04:25 | + 04:25 |
| 36 | Gregory Rast | Trek-Segafredo | + 04:25 | + 04:25 |
| 37 | Damiano Cunego | Nippo - Vini Fantini | + 04:25 | + 04:25 |
| 38 | Ricardo Garcia | Kinan Cycling Team | + 04:25 | + 04:25 |
| 39 | Marcos Garcia | Kinan Cycling Team | + 04:25 | + 04:25 |
| 40 | Xabier Zandio | Team Sky | + 04:25 | + 04:25 |
| 41 | Charles Planet | Team Novo Nordisk | + 07:25 | + 07:25 |
| 42 | Rei Onodera | Utsunomiya Blitzen | + 07:47 | + 07:47 |
| 43 | Kohei Uchima | Bridgestone - Anchor | + 07:47 | + 07:47 |
| 44 | Hayato Yoshida | Matrix Powertag | + 07:47 | + 07:47 |
| 45 | Naoya Yoshioka | Nasu Blasen | + 07:47 | + 07:47 |
| 46 | Yukihiro Doi | Matrix Powertag | + 07:47 | + 07:47 |
| 47 | Kazuo Inoue | Bridgestone - Anchor | + 10:00 | + 10:00 |
| 48 | Hayato Okamoto | + 10:00 | + 10:00 | |
| 49 | Masakazu Ito | + 10:00 | + 10:00 | |
| 50 | Hsuan Lu Shao | Attaque Team Gusto | + 10:00 | + 10:00 |
| 51 | Kota Sumiyoshi | Team Ukyo | + 10:00 | + 10:00 |
| 52 | Takaaki Hori | Utsunomiya Blitzen | + 10:51 | + 10:51 |
| 53 | Keisuke Kimura | + 12:03 | + 12:03 |