| # | Rider | Team | Time | Gap |
|---|---|---|---|---|
| 1 | Joaquim Rodríguez | Team Katusha | 04:52:40 | |
| 2 | Alejandro Valverde | Caisse d'Epargne | + 06 | + 06 |
| 3 | Michel Kreder | Garmin-Transitions | + 08 | + 08 |
| 4 | Alexandr Kolobnev | Team Katusha | + 10 | + 10 |
| 5 | Rubén Pérez Moreno | Euskaltel-Euskadi | + 12 | + 12 |
| 6 | Benat Intxausti | Euskaltel-Euskadi | + 14 | + 14 |
| 7 | Mauro Finetto | Liquigas-Doimo | + 14 | + 14 |
| 8 | Maxime Bouet | AG2R La Mondiale | + 14 | + 14 |
| 9 | José Oroz Juan | Euskaltel-Euskadi | + 14 | + 14 |
| 10 | Valerio Agnoli | Liquigas-Doimo | + 18 | + 18 |
| 11 | Angel Vicioso | Andalucía - Cajasur | + 19 | + 19 |
| 12 | Arkaitz Durán | Footon-Servetto | + 19 | + 19 |
| 13 | Ivan Velasco | Euskaltel-Euskadi | + 19 | + 19 |
| 14 | Amets Txurruka | Euskaltel-Euskadi | + 19 | + 19 |
| 15 | Kristjan Koren | Liquigas-Doimo | + 19 | + 19 |
| 16 | René Mandri | AG2R La Mondiale | + 19 | + 19 |
| 17 | Alberto Benitez Jose | Footon-Servetto | + 19 | + 19 |
| 18 | Egoi Martinez | Euskaltel-Euskadi | + 19 | + 19 |
| 19 | Aitor Perez Arrieta | Footon-Servetto | + 19 | + 19 |
| 20 | Peter Stetina | Garmin-Transitions | + 19 | + 19 |
| 21 | Gustavo Veloso | Xacobeo-Galicia | + 24 | + 24 |
| 22 | Jose Herrada | Caja Rural | + 25 | + 25 |
| 23 | Christian Meier | Garmin-Transitions | + 25 | + 25 |
| 24 | Guillaume Bonnafond | AG2R La Mondiale | + 28 | + 28 |
| 25 | Gustavo Dominguez Lemos | Xacobeo-Galicia | + 28 | + 28 |
| 26 | Christian Knees | Team Milram | + 31 | + 31 |
| 27 | Manuel Vazquez | Andalucía - Cajasur | + 32 | + 32 |
| 28 | Javier Moreno | Andalucía - Cajasur | + 32 | + 32 |
| 29 | Dominik Nerz | Team Milram | + 32 | + 32 |
| 30 | Marcos Garcia | Xacobeo-Galicia | + 32 | + 32 |
| 31 | Alexander Efimkin | AG2R La Mondiale | + 37 | + 37 |
| 32 | Victor Rodrigues | Caja Rural | + 37 | + 37 |
| 33 | Mikel Landa | Orbea | + 40 | + 40 |
| 34 | Gregory Brenes | Burgos 2016 - Castilla y Leon | + 40 | + 40 |
| 35 | Brian Vandborg | Liquigas-Doimo | + 42 | + 42 |
| 36 | Vasil Kiryienka | Caisse d'Epargne | + 48 | + 48 |
| 37 | Johannes Fröhlinger | Team Milram | + 48 | + 48 |
| 38 | Eduard Vorganov | Team Katusha | + 48 | + 48 |
| 39 | José Gomez | Andalucía - Cajasur | + 48 | + 48 |
| 40 | Igor Anton | Euskaltel-Euskadi | + 53 | + 53 |
| 41 | Rubén Plaza | Caisse d'Epargne | + 55 | + 55 |
| 42 | Rigoberto Uran | Caisse d'Epargne | + 56 | + 56 |
| 43 | Alan Perez Lezaun | Euskaltel-Euskadi | + 01:00 | + 01:00 |
| 44 | Fabricio Ferrari | Caja Rural | + 01:07 | + 01:07 |
| 45 | Egoitz Garcia | Caja Rural | + 01:07 | + 01:07 |
| 46 | Mikel Nieve | Euskaltel-Euskadi | + 01:07 | + 01:07 |
| 47 | Alexandre Botcharov | Team Katusha | + 01:07 | + 01:07 |
| 48 | Ivan Santaromita | Liquigas-Doimo | + 01:07 | + 01:07 |
| 49 | Vladimir Karpets | Team Katusha | + 01:37 | + 01:37 |
| 50 | David Arroyo | Caisse d'Epargne | + 01:37 | + 01:37 |
| 51 | Giampaolo Cheula | Footon-Servetto | + 01:37 | + 01:37 |
| 52 | Xabier Zandio | Caisse d'Epargne | + 01:57 | + 01:57 |
| 53 | Axetza Pena Iza | Caja Rural | + 02:30 | + 02:30 |
| 54 | Pedro Merino Criado | Footon-Servetto | + 04:21 | + 04:21 |
| 55 | Angel Madrazo | Caisse d'Epargne | + 04:21 | + 04:21 |
| 56 | Francesco Bellotti | Liquigas-Doimo | + 04:21 | + 04:21 |
| 57 | Markus Eibegger | Footon-Servetto | + 04:21 | + 04:21 |
| 58 | Marco Corti | Footon-Servetto | + 04:51 | + 04:51 |
| 59 | Blel Kadri | AG2R La Mondiale | + 04:51 | + 04:51 |
| 60 | Evgeni Petrov | Team Katusha | + 04:51 | + 04:51 |
| 61 | Thomas Rohregger | Team Milram | + 04:51 | + 04:51 |
| 62 | David García Dapena | Xacobeo-Galicia | + 04:51 | + 04:51 |
| 63 | Serguei Klimov | Team Katusha | + 04:51 | + 04:51 |
| 64 | Mauricio Soler | Caisse d'Epargne | + 04:51 | + 04:51 |
| 65 | Timothy Duggan | Garmin-Transitions | + 04:51 | + 04:51 |
| 66 | Luca Mazzanti | Team Katusha | + 04:51 | + 04:51 |
| 67 | Matthias Russ | Team Milram | + 04:51 | + 04:51 |
| 68 | Alessandro Vanotti | Liquigas-Doimo | + 05:03 | + 05:03 |
| 69 | Iban Mayoz | Footon-Servetto | + 06:13 | + 06:13 |
| 70 | Ion Izagirre | Orbea | + 06:28 | + 06:28 |
| 71 | Diego Gallego | Burgos 2016 - Castilla y Leon | + 06:28 | + 06:28 |
| 72 | Jorge Azanza | Euskaltel-Euskadi | + 09:48 | + 09:48 |
| 73 | Avelino Antuna Coro Andres | Burgos 2016 - Castilla y Leon | + 09:48 | + 09:48 |
| 74 | Javier Ramirez | Andalucía - Cajasur | + 09:48 | + 09:48 |
| 75 | Raul Santamarta Valvuena | Burgos 2016 - Castilla y Leon | + 09:48 | + 09:48 |
| 76 | Gustavo Rodriguez Iglesias | Xacobeo-Galicia | + 09:48 | + 09:48 |
| 77 | David de La Cruz | Caja Rural | + 09:53 | + 09:53 |
| 78 | Manuel Calvente | Andalucía - Cajasur | + 09:56 | + 09:56 |
| 79 | Antonio Piedra | Andalucía - Cajasur | + 09:56 | + 09:56 |
| 80 | Alberto Fernandez Sainz | Xacobeo-Galicia | + 09:56 | + 09:56 |
| 81 | Oleg Chuzhda | Caja Rural | + 09:56 | + 09:56 |
| 82 | Trent Lowe | Garmin-Transitions | + 09:56 | + 09:56 |
| 83 | Iván Melero | Burgos 2016 - Castilla y Leon | + 11:31 | + 11:31 |
| 84 | Sergio Carrasco Garcia | Andalucía - Cajasur | + 12:29 | + 12:29 |
| 85 | Vladimir Isaichev | Xacobeo-Galicia | + 13:04 | + 13:04 |
| 86 | Andoni Blazquez Berasarte | Orbea | + 13:29 | + 13:29 |
| 87 | Pablo Lechuga | Andalucía - Cajasur | + 13:29 | + 13:29 |
| 88 | Adrian Saez | Orbea | + 13:29 | + 13:29 |
| 89 | Ricardo Garcia | Orbea | + 13:29 | + 13:29 |